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Online Laboratory Magazine
06/14/2021

08/28/2017

More inflexible than imagined



Oligosaccharides - chains of sugar building blocks - are some of the most important molecules in living creatures. They make up a large part of the surface of cells and contribute to the immune system's ability to distinguish the body's own cells from pathogens or other foreign cells. Oligosaccharides on the surface of blood cells also determine our blood group and many proteins carry oligosaccharide appendages, which are essential for protein function.

Scientists had previously thought that these sugar molecules were freely mobile and did not form rigid structures. Rigid three-dimensional molecular structures - referred to by experts as secondary structures - had been found only in DNA, in which the molecules form a double helix, and in proteins, in which partial regions often form spirals or small surfaces with the structure of corrugated metal.

However, an international research team has now found such secondary structures in oligosaccharides. "We were able to show that the structure of certain oligosaccharides that contain the basic building block fucose have a characteristic rigidity," explains Mario Schubert, head of the research team. Schubert was at ETH Zurich for several years and now works at the University of Salzburg.

Stable arrangement

The newly discovered secondary structural element determines how the three sugar building blocks in the oligosaccharide are spatially related: the first building block - the sugar type fucose - and the third building block are stacked parallel to one another, while the middle block is at right angles to the other two. This structure is stabilised by a chemical hydrogen bond between the first and third blocks.

This structure, comprising three blocks, is a comparatively small-scale molecular unit. In comparison, spiral secondary structures in proteins can extend over several dozen protein building blocks.

Dogma disproved

Until now scientists had assumed that the hydrogen bonds between oligosaccharide building blocks were very weak and could therefore be neglected. The prevailing opinion was that no secondary structures existed in oligosaccharides. "Our work now shows that certain hydrogen bonds have to be taken into account. As a slight tip of the scales, they can help significantly in forcing the sugar building blocks into a rigid corset," says Schubert.

"Oligosaccharides with the newly discovered structural pattern are recognised easily by other molecules using the lock and key principle, because a rigid, inflexible structure simplifies molecular recognition," says Schubert. This lock and key principle in oligosaccharides is particularly important in the case of immune system molecules and stem cells. The new findings help to better understand the interactions of such molecules.

Present in many sugar molecules

Structural biologists often use computer programmes to determine the three-dimensional structure of molecules. "This software must now be expanded to account for the new oligosaccharide secondary structural element," says Schubert.

The researchers at ETH Zurich, University of Basel and Ecole Normale Supérieure in Paris detected the new structural element by nuclear magnetic resonance spectroscopy in two blood group oligosaccharides and four other oligosaccharides. However, the scientists assume that the structural element also appears in many other cell surface and protein oligosaccharides. They found evidence of such patterns in more than 200 oligosaccharides in a protein structure database.

» Original publication

Source: ETH Zürich